The Atiyah-Patodi-Singer index theorem describes the bulk-edge correspondence of symmetry protected topological insulators. The mathematical setup for this theorem is, however, not directly related to the physical fermion system, as it imposes on the fermion fields a non-local and unnatural boundary condition known as the "APS boundary condition" by hand. In 2017, we showed that the same integer as the APS index can be obtained from the η invariant of the domain-wall Dirac operator. Recently we gave a mathematical proof that the equivalence is not a coincidence but generally true. In this contribution to the proceedings of LATTICE 2019, we try to explain the whole story in a physicist-friendly way.