The Mu2e experiment at Fermilab will search for the neutrinoless muon-to-electron conversion in the nuclear field by stopping negative muons on an Al target. The experimental signature of $\mu^{-}$ to $e^{-}$ conversion on Al is the observation of mono-energetic electrons with 104.97 MeV produced by the lepton violating reaction. Rejection of one of the most important experimental backgrounds coming from muon Decays-In-Orbit requires a momentum resolution $<1\%$ FWHM and a momentum scale calibrated to an accuracy of better than $0.1\%$ or $0.1$ MeV at an electron energy of $\sim$100 MeV. Among other momentum scale calibration techniques, the collaboration is considering using 68.9 MeV positrons from decays of stopped positive pions. This calibration measurement has a significant background dominated by the muon decays-in-flight affecting the calibration accuracy. In this article, we discuss the momentum calibration measurement results.